As can be seen in this photo, the vintage PAF leg length is noticeably longer than a DSD:

The short legged baseplates are intended to improve compatibility with thin bodies.
If one is using a mounting ring, this is of little consequence. However, if one is mounting the pickup directly to the body, there will obviously be a disparity in distance between pickup and strings, and that will make an audible difference.
It seems all but apparent that during the recording of VH1 and onward, whatever Ed was using was wound onto a PAF body. A PAF has a height (foot to the top of the bobbin) of 27mm. If Ed's body was routed to about the same depth as a Fender, the height of the pickup above the surface of the body should be easy to estimate. Given a neck of Fender dimensions, and bridge saddle height set for fairly low action, the distance between pickup and strings can be estimated.
But as can be seen above, just screwing a modern pickup to the body will give a markedly different installed height as compared to Ed's PAF assembly. I don't know what Seymour's baseplates look like today, but if he's winding his '78 pickup onto a short legged assembly, then he's overlooked an important detail.